MmuEX7005539 @ mm10
Exon Skipping
Gene
ENSMUSG00000048400 | Prss54
Description
protease, serine 54 [Source:MGI Symbol;Acc:MGI:1918243]
Coordinates
chr8:95565458-95575231:-
Coord C1 exon
chr8:95575137-95575231
Coord A exon
chr8:95571008-95571179
Coord C2 exon
chr8:95565458-95565716
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGCCTATGCTCCCTCTGCAGTTT
3' ss Score
7.66
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
Exon sequences
Seq C1 exon
CTGCTCATGGTGCTCGCTGTGCTTCTCTCTGGGGATGGCAGAGATGCGAGGGATGCTGCTGATGCTGCTGTACATATCCCACTCGTCATCTGCCA
Seq A exon
TTTGCGGCATCCAGAAAGCCACCATCGCGGACAAGTTAAAGGAGAACCTCGTGAGCAGCACCGAGTTCCCCTGGGTGGTGTCCATCCAGGACAAGCAGTACACCCACCTGGCTTTCGGCTGCATTCTCAGCGAGTTCTGGATCCTCAGCACCGCCTCCGCTCTCCAGCACAG
Seq C2 exon
GAAGGAGGTTATTGCTGTTGTTGGTATATCTAACATGGATCCCCGAAAGACTGACCACAGAGAGTATTCAGTCAATACCATCATCCCCCATGAGAACTTTGACAACGTCTCAATGGGCAATAACATAGCCCTCCTGAAGACAGAATCCGCCATGCATTTCAACGACCTGGTCCAGGCCATCTGCTTCCTGGGCAAAAAGCTACATAAGCCACCAGCCTTGAAGAACTGCTGGGTAGCAGGATGGAATCCCACGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048400-'4-7,'4-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=75.9)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTCTGGGGATGGCAGAG
R:
GGACCAGGTCGTTGAAATGCA
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types