BtaEX6081119 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000007488 | ZFP90

Description

ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]

Coordinates

chr18:36023195-36029234:+

Coord C1 exon

chr18:36023195-36023321

Coord A exon

chr18:36023650-36023745

Coord C2 exon

chr18:36027583-36029234

Length

96 bp

Sequences

Splice sites

3' ss Seq

ATGTGTTTACCTGTGAGCAGGAT

3' ss Score

5.29

5' ss Seq

CAGGTAAAT

5' ss Score

8.76

Exon sequences

Seq C1 exon

GAATCACTGACATTTAAGGATGTAGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGATGCTGCTCAGAGGCGCTTGTACAGGGATGTGATGTTGGAGAACTATAGCCACTTGGTTTCTCTTG

Seq A exon

GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG

Seq C2 exon

ACTGGAAGACCAGGCCTGAAGCCAAATCTTCACATCTGCAGCAGAGTATATCTAAAGTATCCCTTAGCACAGATGAGCTCTCACATACCACGGGAGAAGATGCTTGGGACCTTAGTGGCCAGTTAGAAAGGCATAAGGAAAACTGGAAGAGACATCTGGGGCCAGATTCATCCACCCAGAAGAAGATAATCACACCAGAGGAAACTTGTGAGCAAAATACATTTGGTGAAAACTGTAGATTGAACACAGACCTGATTACACAACTGAACATTCCTCCAGGATCTAGTGAATGTGATACACTTGGGAGCAATTTGGGACATAATTCAGACTTACTTAATCAGAATAATATCCTTGCAAAAAAGAAACCTTATAAATGCAATAAATGTAGAAAAGCATTTATTCACAGATCATCTCTGACTAAACATGAGAAAACTCATAAAGGAGATGGAGCTTTCCCCAACGGTACAGATCAGGGAATTTATCCTGGAAAGAAGCACCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000007488-'5-8,'5-4,6-8=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.023 A=0.152 C2=0.285

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.2)

Main Inclusion Isoform:

ENSBTAP00000032448