MmuEX0053687 @ mm10
Exon Skipping
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:106419071-106426598:+
Coord C1 exon
chr8:106419071-106419197
Coord A exon
chr8:106419421-106419610
Coord C2 exon
chr8:106423913-106426598
Length
190 bp
Sequences
Splice sites
3' ss Seq
GCGCCTTTTCTTTTCTTCAGAGT
3' ss Score
9.75
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG
Seq A exon
AGTTCCTGAGGATCAAGGACTAGTACTGACTTATAGGAGGGTCCTTTGTCTGCTTGCTCAAACACCCAAATCTTGTGTGTTTACCCATGAGCAGGGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAAAGAAATCCAAAGACCTTTCTGTCCAG
Seq C2 exon
ACTGGAAGACCAGGCCTGAGTCCTCACGGAGTCCTCAGCAGGGCGTATCTGAAGTATTCCTCAGAACAAATGTTTTATCACACACCACAATAGGTGATATCTGGAATGTCGCTATCCAGGGGCATCAGGAAAGTGGGAGAAGACATCTGGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCACTCTAGAGAAAAAAATTGAGCAAAACAAAGTTGGTGAAGACTCTAGTTTGAGCACAGACTTGGTTCCACAACTGGACATTTCTTCAAGTATAAGGCCCAGTGACTGTAAAACATTTGGAAATAATTTGGAACACAATTCAGAACTAGTTACTCAGAGTAATATCCTTGCTAAAAAGAAGCCTTATAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATAAACACGAGAAGATTCATAAAGGCGATCCTTACTCCAATGGTACAGACCAAGGAGCTCAGTCTGGAAGGAAACACCATGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907-'4-7,'4-3,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.050 C2=0.296
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF139121=zf-C2H2_6=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCCAGGAAGAATGGCAC
R:
CCCCAGATGTCTTCTCCCACT
Band lengths:
246-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types