MmuEX0053687 @ mm9

Exon Skipping

Gene

ENSMUSG00000031907 | Zfp90

Description

zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]

Coordinates

chr8:108942971-108949628:+

Coord C1 exon

chr8:108942971-108943097

Coord A exon

chr8:108943415-108943510

Coord C2 exon

chr8:108947813-108949628

Length

96 bp

Sequences

Splice sites

3' ss Seq

GTGTGTTTACCCATGAGCAGGGT

3' ss Score

4.04

5' ss Seq

CAGGTAATG

5' ss Score

9.43

Exon sequences

Seq C1 exon

GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG

Seq A exon

GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAAAGAAATCCAAAGACCTTTCTGTCCAG

Seq C2 exon

ACTGGAAGACCAGGCCTGAGTCCTCACGGAGTCCTCAGCAGGGCGTATCTGAAGTATTCCTCAGAACAAATGTTTTATCACACACCACAATAGGTGATATCTGGAATGTCGCTATCCAGGGGCATCAGGAAAGTGGGAGAAGACATCTGGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCACTCTAGAGAAAAAAATTGAGCAAAACAAAGTTGGTGAAGACTCTAGTTTGAGCACAGACTTGGTTCCACAACTGGACATTTCTTCAAGTATAAGGCCCAGTGACTGTAAAACATTTGGAAATAATTTGGAACACAATTCAGAACTAGTTACTCAGAGTAATATCCTTGCTAAAAAGAAGCCTTATAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATAAACACGAGAAGATTCATAAAGGCGATCCTTACTCCAATGGTACAGACCAAGGAGCTCAGTCTGGAAGGAAACACCATGAGTGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000031907-'2-6,'2-4,3-6

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.116 A=0.091 C2=0.296

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF139121=zf-C2H2_6=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)

Main Inclusion Isoform:

ENSMUSP00000034382