RnoEX0101756 @ rn6

Exon Skipping

Gene

ENSRNOG00000020087 | Zfp90

Description

zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]

Coordinates

chr19:38601524-38608779:+

Coord C1 exon

chr19:38601524-38601650

Coord A exon

chr19:38601968-38602063

Coord C2 exon

chr19:38607134-38608779

Length

96 bp

Sequences

Splice sites

3' ss Seq

GTGTGTTTACCCATGAGCAGGGT

3' ss Score

4.04

5' ss Seq

CAGGTAAAT

5' ss Score

8.76

Exon sequences

Seq C1 exon

GAGTCAGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCGCCATGTGGGCCCCGCCCAGAGGAGCTTATATAGGGACGTCATGCTGGAGAACTATAGCCACCTGGTTTCGCTCG

Seq A exon

GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG

Seq C2 exon

ACTGGAAGACCAGGCCTGACATCAAATCGTGGAGTTCCCAGCAGGGCGTATCTGAAGTATCCCACAGTGCAAATGTTTGGTCGCACGCCACATTCGGAGATATCTGGGGTGTCAATACCCAGAGGCACCAGGAGAGTTGGAGAAGACATCTTGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCGCTCTGGAGAAAATAGCTGAGCAAAATAAGTTTGGTGAGGACTCAGGTTTGAGCACAGACTTGGTTCCACAATTGGACGTTTCTTCAAGCATAAGGCCCAGCGAATGTAAGACATTTGGAAATAATTTGGAATACAATTCTGAATTAGTTACTCAGAGTGGTATCCCTGCTAAAAAGAAGCCTTACAAGTGTGATAAATGTAGGAAGTCATTTATTCATAGATCATCACTCAATAAACATGAGAAAATTCATAAAGACGATGCTTATTCCAATGGTACGGATCAAGGAGTTCCTTCTGGAAGGAAACATCATGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000020087_MULTIEX1-3/4=2-C2

Average complexity

C1*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.140 A=0.121 C2=0.232

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)

Main Inclusion Isoform:

ENSRNOP00000027209