BtaEX6081128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36125224-36127209:+
Coord C1 exon
chr18:36125224-36125399
Coord A exon
chr18:36126003-36126131
Coord C2 exon
chr18:36127024-36127209
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGCTCTCCTTTTCTCCCCAGAGA
3' ss Score
10.99
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCACTTCCGTGATGCAGGTGACAGCCACGGATGAGGACGACGCCGTTAACACCTACAACGGTGTGGTTGCTTACTCCATCCACAGTCAAGAGCCAAAGGACCCGAATGACCTCATGTTCACAGTCCACCGGAGCACGGGTACCATCAGCGTCATCTCCAGTGGCCTGGACCGGGAA
Seq A exon
AGAGTCCCCGAGTACACACTGACCATCCATGCCACAGACATGGATGGGGACGGCTCCAGCACCACGGCTATGGCCATAGTGGAAATCCTCGATGCCAACGACAATGCTCCCGTGTTTGATCCCCAGAAG
Seq C2 exon
TATGAGGCCCGTGTGCCTGAGAACACAGTGAGCCACGAGGTGCAGAGGCTGACAGTGACTGATCTGGACGCCCCTAACTCACCAGCATGGCGTGCCACCTACCGCATCGTGGGAGGTGACAACGGGGACCATTTTACCATCACTACTGACCCCGAGAGCAACCAGGGTATCCTGACCACCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248-'13-10,'13-7,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.465 C2=0.726
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAAGAGCCAAAGGACCC
R:
GCTCTCGGGGTCAGTAGTGAT
Band lengths:
253-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]