MmuEX6038192 @ mm10
Exon Skipping
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:106538994-106541492:+
Coord C1 exon
chr8:106538994-106539169
Coord A exon
chr8:106539795-106539923
Coord C2 exon
chr8:106541307-106541492
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCCTTTCTCCCCTAGAAA
3' ss Score
11.28
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCACTTCTGTGATGCAGGTGACAGCCACAGATGAGGACGATGCTGTCAACACTTACAATGGGGTGGTGGCTTACTCCATCCATAGCCAAGAGCCGAAGGAGCCACACGACCTCATGTTCACCATCCATAAAAGCACGGGAACCATTAGCGTCATATCCAGTGGCCTGGACCGAGAG
Seq A exon
AAAGTCCCTGAGTACAGACTGACCGTCCAGGCCACAGACATGGATGGAGAGGGCTCTACCACGACGGCAGAGGCCGTTGTGCAAATCCTTGATGCCAACGATAACGCTCCGGAGTTTGAGCCGCAGAAG
Seq C2 exon
TATGAGGCTTGGGTGCCTGAGAACGAAGTGGGCCATGAGGTACAGAGGCTGACAGTGACTGATCTCGATGTCCCCAACTCGCCAGCGTGGCGTGCCACCTACCACATCGTGGGAGGTGATGATGGGGACCATTTCACCATCACCACTCACCCAGAGACCAACCAAGGCGTCCTGACAACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-'8-19,'8-9,10-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.907 C2=0.677
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACACGACCTCATGTTC
R:
TTGGTTGGTCTCTGGGTGAGT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types