RnoEX6060446 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38700357-38703031:+
Coord C1 exon
chr19:38700357-38700532
Coord A exon
chr19:38701165-38701293
Coord C2 exon
chr19:38702846-38703031
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCCTCTCTCCCTAGAAA
3' ss Score
11.72
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCACTTCTGTGATGCAGGTGACAGCCACAGATGAGGACGACGCCATCAATACTTACAATGGGGTGGTGGCTTACTCCATCCATAGCCAAGAGCCGAAGGAGCCACACGACCTCATGTTCACCATCCATAAAAGCACTGGGACTATTAGCGTCATCTCCAGTGGCCTGGATAGAGAG
Seq A exon
AAAGTCCCTGAGTACACACTGACCATCCAGGCCACAGACATGGACGGAGACGGCTCTACCACAACAGCCGAGGCCGTAGTGCAGATCCTTGATACCAATGATAACGCTCCAGAGTTCCAGCCGCAAAAG
Seq C2 exon
TATGAGGCTTGGGTGCCTGAGAATGCAGTGGGCCACGAGGTACAGAGGCTGACAGTGACCGATCTGGATTCCCCCAACTCACCGGCATGGCGTGCCACCTACCACATTGTGGGAGGTGACGATGGGGATCATTTCACCGTGGCCACTCACCCAGAGACCAACCAAGGCATCCTGACAACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.930 C2=0.677
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGGGTGGTGGCTTACTC
R:
CCATCGTCACCTCCCACAATG
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]