GgaEX7008299 @ galGal4
Exon Skipping
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18314000-18314648:+
Coord C1 exon
chr11:18314000-18314175
Coord A exon
chr11:18314262-18314390
Coord C2 exon
chr11:18314463-18314648
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCCATCGCAGCGC
3' ss Score
10.13
5' ss Seq
ACGGTACCA
5' ss Score
5.45
Exon sequences
Seq C1 exon
GCACTTCGGTGATGCGGGTGAACGCCACGGATGCTGATGATGATGTGGAGACCTACAACGGTGTCATCGCCTACTCCATCCTCAGCCAGGAGCCGCGGGAGCCCCATCCCCACATGTTCACCGTCAACCGCGCCACCGGCACCCTCAGCGTCATCGCCAGCGGCCTCGACCGGGAG
Seq A exon
CGCGTGCGGGAGTACACGCTGACCATGCAGGCGGCTGACCTGGACGGGCAGGGGCTGACCACGACGGCGCTGGCTGTGATTGAGATCACGGACGTCAATGACAACGCCCCTGAGTTTGACCCCAAAACG
Seq C2 exon
TATGAGGCGGCTGTGCCAGAGAATGAGGCCGAGCTGGAGGTGGCCCGGTTGGCCACCACGGACCTGGATGAGCCGCACACACCAGCGTGGCGTGCCGTCTACTCCATCGTGCGTGGCAATGAGGGCGGTGCCTTCACCATCACCACTGACCCTGCCAGCAACGAGGGCGTCCTGCGCACGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.233 C2=0.532
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCCATCCTCAGCCAGG
R:
GTCAGTGGTGATGGTGAAGGC
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]