BtaEX6081130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36123800-36125399:+
Coord C1 exon
chr18:36123800-36123955
Coord A exon
chr18:36124041-36124185
Coord C2 exon
chr18:36125224-36125399
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACAGACCTGTGCCCCCACAGCTC
3' ss Score
7.54
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CTCAAATCTAATAAGGACAGAGGCACCAAGATTTTCTACAGCATCACGGGGCCTGGGGCAGACAGCCCACCAGAGGGTATCTTTGCTATAGAGAAGGAAACAGGCTGGTTGTTGCTGAATAAGCCACTGGACCGGGAGAAGATTGCCAAGTATGAG
Seq A exon
CTCTTTGGCCATGCTGTATCAGAGAACGGCGCCTCTGTGGAAGATCCCATGAACATCTCCATCATTGTAACAGACCAGAATGACCACAAGCCCAAGTTCACCCAGGATGTCTTCAGAGGGAGCGTCTTGGAAGGGGTGCTACCTG
Seq C2 exon
GCACTTCCGTGATGCAGGTGACAGCCACGGATGAGGACGACGCCGTTAACACCTACAACGGTGTGGTTGCTTACTCCATCCACAGTCAAGAGCCAAAGGACCCGAATGACCTCATGTTCACAGTCCACCGGAGCACGGGTACCATCAGCGTCATCTCCAGTGGCCTGGACCGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248-'10-6,'10-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.224 C2=0.390
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTACAGCATCACGGGGC
R:
CGGTGGACTGTGAACATGAGG
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]