MmuEX6038194 @ mm10
Exon Skipping
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:106536816-106539169:+
Coord C1 exon
chr8:106536816-106536971
Coord A exon
chr8:106537074-106537218
Coord C2 exon
chr8:106538994-106539169
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCGGACCTCTGTGCCCACAGCTT
3' ss Score
7.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTCAAATCTAATAAGGACAGAGGCACCAAGATTTTCTACAGCATCACAGGGCCTGGCGCAGACAGTCCCCCCGAAGGAGTCTTCACCATAGAGAAGGAGTCGGGCTGGCTGTTGTTGCATATGCCACTGGACAGGGAGAAGATTGTCAAGTACGAG
Seq A exon
CTTTATGGCCACGCTGTATCTGAGAATGGTGCCTCTGTAGAGGAGCCCATGAACATATCCATCATTGTGACAGACCAGAATGACAACAAGCCCAAGTTCACTCAAGACACCTTCAGAGGGAGTGTTCTGGAGGGAGTAATGCCTG
Seq C2 exon
GCACTTCTGTGATGCAGGTGACAGCCACAGATGAGGACGATGCTGTCAACACTTACAATGGGGTGGTGGCTTACTCCATCCATAGCCAAGAGCCGAAGGAGCCACACGACCTCATGTTCACCATCCATAAAAGCACGGGAACCATTAGCGTCATATCCAGTGGCCTGGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-'1-10,'1-5,7-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.510 C2=0.407
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACAGCATCACAGGGCCT
R:
GGTGAACATGAGGTCGTGTGG
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types