GgaEX7008301 @ galGal4
Exon Skipping
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18313505-18314175:+
Coord C1 exon
chr11:18313505-18313660
Coord A exon
chr11:18313735-18313879
Coord C2 exon
chr11:18314000-18314175
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCACCCCTCTGCCCTGCAGCTC
3' ss Score
9.51
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATCAAATCCAACCGCGACCGGGAGGCAAAGATTTTCTACAGCATCACCGGGCAGGGGGCGGATGCTCCCCCCGAGGGCATCTTCACCATTGAGAAGGAGACAGGCTGGATGAAGGTGACGCAGCCGCTGGACCGGGAGCACATCAACAAGTACCAC
Seq A exon
CTCTACTCCCATGCCGTGTCCGAAAATGGCAAACCCGTGGAGGAGCCGATGGAGATCATAGTGACGGTGACGGACCAAAATGACAACAAGCCCCAGTTCACACAGGAGGTGTTCCGGGGCTCCGTGCCTGAAGGCGCGCTGCCAG
Seq C2 exon
GCACTTCGGTGATGCGGGTGAACGCCACGGATGCTGATGATGATGTGGAGACCTACAACGGTGTCATCGCCTACTCCATCCTCAGCCAGGAGCCGCGGGAGCCCCATCCCCACATGTTCACCGTCAACCGCGCCACCGGCACCCTCAGCGTCATCGCCAGCGGCCTCGACCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=0.673 C2=0.441
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTACAGCATCACCGGGC
R:
GACGGTGAACATGTGGGGATG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]