DreEX0020290 @ danRer10
Exon Skipping
Gene
ENSDARG00000102750 | cdh1
Description
cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
Coordinates
chr7:52832256-52833711:-
Coord C1 exon
chr7:52833556-52833711
Coord A exon
chr7:52833309-52833453
Coord C2 exon
chr7:52832256-52832431
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTATTATGTTTTTAGCTT
3' ss Score
8.16
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATAAAGTCGGATTATGCTATTGAAACTCGGTTGGCATACAAGATCACTGGTGAAGGGGCAGATCTAGACCCTAAGGGTATTTTCACGATAGACAGACTATCAGGATGGGTCAGTGTGACTCAGCTACTTGACAGAGAAAAAAAAGCATCATACAAA
Seq A exon
CTTAGGGCTCATGCAAACGGAGTGGACGCGGATGTCACAGAAAAGCCAATGGACATTATTGTAACTGTGACAGACCAAAATGATAATAAGCCTGTGTTTACTCAAAACCCTTTTAATGGAAATGTTCCTGAAGCTTTGGAAAAGG
Seq C2 exon
GTGAAGTATTTATGACAGTCACAGCCACTGATGCAGATGATAAAGAAAACACTGACAATGCTGATATCAGTTATGTCATTATAAGCCAAGATCCACCATCTCCAAAACCTAACATGTTTGCTATCAATCCTGTAAGTGGAGGGATTTCTGTGCTGGAAAAAGGCCTGGACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102750-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.372 C2=0.441
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCAGATCTAGACCCTAAGG
R:
CCAGCACAGAAATCCCTCCAC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]