GgaEX7008303 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18322085-18322739:+
Coord C1 exon
chr11:18322085-18322240
Coord A exon
chr11:18322306-18322450
Coord C2 exon
chr11:18322564-18322739
Length
145 bp
Sequences
Splice sites
3' ss Seq
GGCTGACGGTGCCCCCGCAGCTC
3' ss Score
6.11
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ATCAAATCCAACAAGGACAAGGAGTCCAAGGTGTACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTGGGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGGAGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACACC
Seq A exon
CTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCCCGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCAGAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTCGTCGGCTACATCGAGGAGAACGCGAAGCCAG
Seq C2 exon
GCACCTCCGTGATGACCGTGAACGCCACGGATGCGGACGATGCGGTGAACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGCAGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGACCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGACCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'10-9,'10-6,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.122 C2=0.475
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTACAGCATCACGGGG
R:
CCGGGTCAATGGTGAACATCT
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]