BtaEX6081144 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36226954-36229957:+
Coord C1 exon
chr18:36226954-36227109
Coord A exon
chr18:36228052-36228196
Coord C2 exon
chr18:36229782-36229957
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTTGGCTCTTGCAGCTC
3' ss Score
9.12
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATCAAATCTAACAAGGAGAAAGAAACCCAAGTTTTCTACAGCATCACTGGCCAAGGAGCTGATACACCCCCTGTCGGTGTTTTTATTATTGAAAGAGAAACAGGATGGTTAAAAGTGACACAGCCTCTGGATAGAGAACAGATTGCCAAGTACATT
Seq A exon
CTCTTCTCTCATGCCGTGTCTTCAAACGGACAAGCCATTGAAGAGCCTATGGAGATTGTGATCACCGTGACCGACCAGAATGACAACAAGCCCCAGTTCACCCAGGAGGTCTTCAAGGGGTCTGTCCTGGAAGGCGCTCTTCCAG
Seq C2 exon
GAACCTCTGTGATGCAGGTCACGGCCACAGATATAGATGACGAGGTGAACACCTACAACGCTGCCATCGGTTACAAAATCCTAGCCCAAGATCCCATGCTGCCGCACAACAAAATGTTCACCATCAACAAGGAAACAGGCGTCATCAGTGTGCTCACCACCGGGCTGGACCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.245 C2=0.017
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTGATACACCCCCTG
R:
ACACTGATGACGCCTGTTTCC
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]