RnoEX0019097 @ rn6
Exon Skipping
Gene
ENSRNOG00000020151 | Cdh1
Description
cadherin 1 [Source:RGD Symbol;Acc:69279]
Coordinates
chr19:38821742-38826126:+
Coord C1 exon
chr19:38821742-38821897
Coord A exon
chr19:38825115-38825259
Coord C2 exon
chr19:38825951-38826126
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCACTTGACTCTCTTGCAGCTC
3' ss Score
8.86
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATCAAATCCAACAGGGACAAAGAGACAACGGTTTTCTACAGCATCACCGGCCCAGGAGCTGACAAACCCCCTGTTGGCGTTTTCATCATTGAGAGGGAGACAGGCTGGCTGAAAGTGACGCAGCCTCTGGACAGAGAAGCCATTGACAAGTACCTT
Seq A exon
CTCTACTCTCATGCTGTGTCATCAAATGGGGAAGCCGTGGAGGATCCCATGGAGATAGTGGTCACAGTCACAGATCAGAATGACAACAGGCCAGAGTTTATCCAGGAGGTCTTTGAGGGATCTGTTGCAGAAGGCGCTCTTCCAG
Seq C2 exon
GAACCTCCGTGATGCAGGTCTCAGCCACTGATGCAGACGATGACATAAACACCTACAATGCTGCCATCGCCTACACCATCCTCAGCCAAGATCCTGAGCTGCCTCACAAAAACATGTTCACTGTCAACCGGGACACTGGGGTCATCAGTGTGGTCACCTCCGGACTGGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020151-'11-6,'11-5,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.327 C2=0.186
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
C2:
PF0002812=Cadherin=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTACAGCATCACCGGCC
R:
CCCGGTTGACAGTGAACATGT
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]