BtaEX6081136 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36239670-36241529:+
Coord C1 exon
chr18:36239670-36239900
Coord A exon
chr18:36240555-36240685
Coord C2 exon
chr18:36241386-36241529
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTCCCTACTCCAGTCC
3' ss Score
8.81
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AACGTGAGTCTCTGATTTTGAAGCCAAAGAAAACCTTAGAGCTGGGTGACCACAAAATCAATCTCAAGCTCATAGACAACCAGAACAAAGACCAGGTGACCACACTTGATGTGCACGTGTGTGACTGTGATGGGATCGTCAGCAACTGCAGGAAGGCCACGGCCTTTGCTGAAGCAGGATTGCAAGTTCCCGCCATCCTGGGGATCCTCGGAGGCATCCTTGCTTTTCTGA
Seq A exon
TCCTTATTTTGCTGCTTCTGCTACTTGTTCGGAGGAGAAGGGTGGTCAAAGAGCCCTTACTGCCCCCAGAAGATGACACCCGGGACAATGTGTATTACTATGATGAAGAAGGAGGTGGAGAAGAAGATCAG
Seq C2 exon
GACTTTGACTTGAGCCAGTTACATAGGGGCCTGGATGCTCGGCCTGAAGTGACTCGCAATGACGTGGCACCAACCCTCATGAGTGTGCCCCAGTACCGACCCCGCCCTGCCAATCCTGATGAAATTGGAAACTTTATTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.750
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(44.9=51.3)
A:
PF0104912=Cadherin_C=PU(22.3=75.0)
C2:
PF0104912=Cadherin_C=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGACCAGGTGACCACAC
R:
TACTGGGGCACACTCATGAGG
Band lengths:
242-373
Functional annotations
There are 1 annotated functions for this event
PMID: 11076937
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cleavage reaction, confocal microscopy, edman degradation, western blot. ELM ID: ELMI001928; ELM sequence: DTRDN; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]