MmuEX6038199 @ mm10
Exon Skipping
Gene
ENSMUSG00000000303 | Cdh1
Description
cadherin 1 [Source:MGI Symbol;Acc:MGI:88354]
Coordinates
chr8:106664196-106666330:+
Coord C1 exon
chr8:106664196-106664423
Coord A exon
chr8:106665394-106665524
Coord C2 exon
chr8:106666187-106666330
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTTCCTTGTCTCCAGTTC
3' ss Score
10.28
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCAAGAATCTCTCATTTTGCAACCAAGAAAGGACTTAGAGATTGGCGAATACAAAATCCATCTCAAGCTCGCGGATAACCAGAACAAAGACCAGGTGACCACGTTGGACGTCCATGTGTGTGACTGTGAAGGGACGGTCAACAACTGCATGAAGGCGGGAATCGTGGCAGCAGGATTGCAAGTTCCTGCCATCCTCGGAATCCTTGGAGGGATCCTCGCCCTGCTGA
Seq A exon
TTCTGATCCTGCTGCTCCTACTGTTTCTACGGAGGAGAACGGTGGTCAAAGAGCCCCTGCTGCCACCAGATGATGATACCCGGGACAATGTGTATTACTATGATGAAGAAGGAGGTGGAGAAGAAGACCAG
Seq C2 exon
GACTTTGATTTGAGCCAGCTGCACAGGGGCCTGGATGCCCGACCGGAAGTGACTCGAAATGATGTGGCTCCCACCCTCATGAGCGTGCCCCAGTATCGTCCCCGTCCTGCCAATCCTGATGAAATTGGAAACTTCATCGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000303-'19-20,'19-18,30-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.288 C2=0.771
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(44.9=51.9)
A:
PF0104912=Cadherin_C=PU(22.3=75.0)
C2:
PF0104912=Cadherin_C=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCATCTCAAGCTCGCGG
R:
GGGAGCCACATCATTTCGAGT
Band lengths:
246-377
Functional annotations
There are 1 annotated functions for this event
PMID: 11076937
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cleavage reaction, confocal microscopy, edman degradation, western blot. ELM ID: ELMI001928; ELM sequence: DTRDN; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types