Special

GgaEX6009513 @ galGal4

Exon Skipping

Gene
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18324313-18325117:+
Coord C1 exon
chr11:18324313-18324534
Coord A exon
chr11:18324611-18324741
Coord C2 exon
chr11:18324974-18325117
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCCATGCCCTCTGCTCGCAGTCC
3' ss Score
8.9
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAATATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGACAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCCTGGGGGGAATCCTGGCCCTGCTGA
Seq A exon
TCCTGCTGCTGCTGCTGCTGCTCTTTGCCCGGCGACGCAAAGTGGAGAAGGAGCCGCTGCTGCCGCCCGAGGATGACATGCGGGACAACGTCTACAACTACGACGAGGAGGGCGGCGGCGAGGAGGACCAG
Seq C2 exon
GACTATGACCTGAGCCAGCTGCACCGCGGCCTGGACGCCCGCCCCGAGGTGATCCGCAATGATGTGGCCCCCCCGCTGATGGCCGCCCCCCAGTACCGGCCCCGGCCCGCCAACCCTGATGAGATCGGGAACTTCATCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.591 C2=0.646
Domain overlap (PFAM):

C1:
PF0002812=Cadherin=PD(43.7=50.7)
A:
PF0104912=Cadherin_C=PU(22.3=75.0)
C2:
PF0104912=Cadherin_C=FE(31.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGGCGAGTACAATATCT
R:
ACATCATTGCGGATCACCTCG
Band lengths:
254-385
Functional annotations
There are 1 annotated functions for this event
PMID: 11076937
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cleavage reaction, confocal microscopy, edman degradation, western blot. ELM ID: ELMI001928; ELM sequence: DTRDN; Overlap: FULL


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]