GgaEX6009513 @ galGal3
Exon Skipping
Gene
ENSGALG00000000608 | F1NUS5_CHICK
Description
NA
Coordinates
chr11:20833502-20834922:+
Coord C1 exon
chr11:20833502-20833723
Coord A exon
chr11:20833800-20833930
Coord C2 exon
chr11:20834779-20834922
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCCATGCCCTCTGCTCGCAGTCC
3' ss Score
8.9
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAATATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGACAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCATGGGGGGAATCCTGGCCCTGCTGA
Seq A exon
TCCTGCTGCTGCTGCTGCTGCTCTTTGCCCGGCGACGCAAAGTGGAGAAGGAGCCGCTGCTGCCGCCCGAGGATGACATGCGGGACAACGTCTACAACTACGACGAGGAGGGCGGCGGCGAGGAGGACCAG
Seq C2 exon
GACTATGACCTGAGCCAGCTGCACCGCGGCCTGGACGCCCGCCCCGAGGTGATCCGCAATGATGTGGCCCCCCCGCTGATGGCCGCCCCCCAGTACCGGCCCCGGCCCGCCAACCCTGATGAGATCGGGAACTTCATCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.591 C2=0.646
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(43.7=50.7)
A:
PF0104912=Cadherin_C=PU(22.3=75.0)
C2:
PF0104912=Cadherin_C=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGGCGAGTACAATATCT
R:
ACATCATTGCGGATCACCTCG
Band lengths:
254-385
Functional annotations
There are 1 annotated functions for this event
PMID: 11076937
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cleavage reaction, confocal microscopy, edman degradation, western blot. ELM ID: ELMI001928; ELM sequence: DTRDN; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]