BtaEX6081145 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36226684-36228196:+
Coord C1 exon
chr18:36226684-36226827
Coord A exon
chr18:36226954-36227109
Coord C2 exon
chr18:36228052-36228196
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTTGTCTCCAGATC
3' ss Score
11.6
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GACTCTCCCTCTGGAACCCAGACGGAAGTGCTCACATTTCCTGGTCCCCACCATGGTCTCAGGAGACAGAAGAGAGACTGGGTTATTCCTCCTATCAGCTGCCCAGAAAATGAGAAAGGCCCGTTTCCTAAGTCGCTGGTCCAG
Seq A exon
ATCAAATCTAACAAGGAGAAAGAAACCCAAGTTTTCTACAGCATCACTGGCCAAGGAGCTGATACACCCCCTGTCGGTGTTTTTATTATTGAAAGAGAAACAGGATGGTTAAAAGTGACACAGCCTCTGGATAGAGAACAGATTGCCAAGTACATT
Seq C2 exon
CTCTTCTCTCATGCCGTGTCTTCAAACGGACAAGCCATTGAAGAGCCTATGGAGATTGTGATCACCGTGACCGACCAGAATGACAACAAGCCCCAGTTCACCCAGGAGGTCTTCAAGGGGTCTGTCCTGGAAGGCGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.135 C2=0.245
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=37.5)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCACATTTCCTGGTCCC
R:
CCAGGACAGACCCCTTGAAGA
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]