GgaEX7008304 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18321843-18322450:+
Coord C1 exon
chr11:18321843-18321977
Coord A exon
chr11:18322085-18322240
Coord C2 exon
chr11:18322306-18322450
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCGCATCGCCACCAGATC
3' ss Score
5.99
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GACACGACGCCGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCCGGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAGCTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGTGCAG
Seq A exon
ATCAAATCCAACAAGGACAAGGAGTCCAAGGTGTACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTGGGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGGAGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACACC
Seq C2 exon
CTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCCCGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCAGAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTCGTCGGCTACATCGAGGAGAACGCGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.115 C2=0.122
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=40.0)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGACCTTCCCCAAG
R:
CTCGATGTAGCCGACGAAGAC
Band lengths:
251-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]