HsaEX6044576 @ hg19
Exon Skipping
Gene
ENSG00000039068 | CDH1
Description
cadherin 1, type 1, E-cadherin (epithelial) [Source:HGNC Symbol;Acc:1748]
Coordinates
chr16:68842327-68844244:+
Coord C1 exon
chr16:68842327-68842470
Coord A exon
chr16:68842596-68842751
Coord C2 exon
chr16:68844100-68844244
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCATTTTGTCTTCAGATC
3' ss Score
10.59
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCTCCGTTTCTGGAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGAAGAGAGACTGGGTTATTCCTCCCATCAGCTGCCCAGAAAATGAAAAAGGCCCATTTCCTAAAAACCTGGTTCAG
Seq A exon
ATCAAATCCAACAAAGACAAAGAAGGCAAGGTTTTCTACAGCATCACTGGCCAAGGAGCTGACACACCCCCTGTTGGTGTCTTTATTATTGAAAGAGAAACAGGATGGCTGAAGGTGACAGAGCCTCTGGATAGAGAACGCATTGCCACATACACT
Seq C2 exon
CTCTTCTCTCACGCTGTGTCATCCAACGGGAATGCAGTTGAGGATCCAATGGAGATTTTGATCACGGTAACCGATCAGAATGACAACAAGCCCGAATTCACCCAGGAGGTCTTTAAGGGGTCTGTCATGGAAGGTGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039068-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=0.115 C2=0.378
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=37.5)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGTTTCTGGAATCCAA
R:
CTGGGTGAATTCGGGCTTGTT
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)