RnoEX6060456 @ rn6
Exon Skipping
Gene
ENSRNOG00000020151 | Cdh1
Description
cadherin 1 [Source:RGD Symbol;Acc:69279]
Coordinates
chr19:38821490-38825259:+
Coord C1 exon
chr19:38821490-38821633
Coord A exon
chr19:38821742-38821897
Coord C2 exon
chr19:38825115-38825259
Length
156 bp
Sequences
Splice sites
3' ss Seq
CGCTTCTGTTTTCTGTTCAGATC
3' ss Score
10.53
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GACCCTGTCTCTGAATCCAACCCAGAGCTGCTCACGTTTCCCAGCTTTCACCAGGGTCTGAGAAGACAGAAACGAGACTGGGTCATCCCTCCCATCAACTGCCCGGAAAATCAAAAGGGCGAATTCCCCCAGCGACTGGTTCAG
Seq A exon
ATCAAATCCAACAGGGACAAAGAGACAACGGTTTTCTACAGCATCACCGGCCCAGGAGCTGACAAACCCCCTGTTGGCGTTTTCATCATTGAGAGGGAGACAGGCTGGCTGAAAGTGACGCAGCCTCTGGACAGAGAAGCCATTGACAAGTACCTT
Seq C2 exon
CTCTACTCTCATGCTGTGTCATCAAATGGGGAAGCCGTGGAGGATCCCATGGAGATAGTGGTCACAGTCACAGATCAGAATGACAACAGGCCAGAGTTTATCCAGGAGGTCTTTGAGGGATCTGTTGCAGAAGGCGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020151-'10-5,'10-4,11-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.115 C2=0.327
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=37.5)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTTTCCCAGCTTTCACC
R:
GCCTTCTGCAACAGATCCCTC
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]