DreEX0020289 @ danRer10
Exon Skipping
Gene
ENSDARG00000102750 | cdh1
Description
cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
Coordinates
chr7:52833309-52833926:-
Coord C1 exon
chr7:52833807-52833926
Coord A exon
chr7:52833556-52833711
Coord C2 exon
chr7:52833309-52833453
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGATTGGTCTCTGCATTTAGATA
3' ss Score
7.35
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GTGGAATCTTCCTCTGATGTGGATCTGACTAAAAATAAAAGAGTAAAGAGAGGTTGGATTATTCCTCCAATCAGTGTATCTGAAAATAGCAAAGGTCCATTCCCAATGAGGCTGGTCCAG
Seq A exon
ATAAAGTCGGATTATGCTATTGAAACTCGGTTGGCATACAAGATCACTGGTGAAGGGGCAGATCTAGACCCTAAGGGTATTTTCACGATAGACAGACTATCAGGATGGGTCAGTGTGACTCAGCTACTTGACAGAGAAAAAAAAGCATCATACAAA
Seq C2 exon
CTTAGGGCTCATGCAAACGGAGTGGACGCGGATGTCACAGAAAAGCCAATGGACATTATTGTAACTGTGACAGACCAAAATGATAATAAGCCTGTGTTTACTCAAAACCCTTTTAATGGAAATGTTCCTGAAGCTTTGGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102750-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.372
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=45.0)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTGATGTGGATCTGACT
R:
CCTTTTCCAAAGCTTCAGGAACA
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]