BtaEX6081929 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015004 | TBCB
Description
Bos taurus tubulin folding cofactor B (TBCB), mRNA. [Source:RefSeq mRNA;Acc:NM_001014939]
Coordinates
chr18:46967874-46971786:+
Coord C1 exon
chr18:46967874-46967970
Coord A exon
chr18:46968648-46968839
Coord C2 exon
chr18:46971714-46971786
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCCACCCACTCCACCCACAGACT
3' ss Score
9.22
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTCATTGACCACAGCGGTGCCCGCCTTGGGGAGTATGAGGACATATCCAAGGTGGAGAAATATGAGATCTCACAAGAAGCCTATGAACAGAGGCAAG
Seq A exon
ACTCAATCCGCTCCTTCCTGAAGCGCAACAAGCTAGGTCGATTCAATGAAGAAGAGCGGGCCCAGCAAGAGGCCGAGAACTCCCAGCGCCTTATCGAGGAGGAGGCCCAGGCCAGCACCATCCCTGTGGGCAGCCGCTGTGAGGTGCGGACACCTGGGCAGCCCCCTCGCAGGGGCACCGTCATGTATGTAG
Seq C2 exon
GACTGACAGATTTCAAACCTGGCTACTGGATTGGCATCCGCTATGATGAACCACTAGGGAAAAACGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015004-'9-4,'9-2,12-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.585 C2=0.000
Domain overlap (PFAM):
C1:
PF145601=Ubiquitin_2=PD(8.2=21.2)
A:
PF0130220=CAP_GLY=PU(31.4=33.8)
C2:
PF0130220=CAP_GLY=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGGGAGTATGAGGACA
R:
GCCATCGTTTTTCCCTAGTGGT
Band lengths:
146-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]