MmuEX0046526 @ mm9
Exon Skipping
Gene
ENSMUSG00000006095 | Tbcb
Description
tubulin folding cofactor B [Source:MGI Symbol;Acc:MGI:1913661]
Coordinates
chr7:31009492-31012719:-
Coord C1 exon
chr7:31012623-31012719
Coord A exon
chr7:31011871-31012054
Coord C2 exon
chr7:31009492-31009564
Length
184 bp
Sequences
Splice sites
3' ss Seq
CATTCTCACCTTGCCCACAGACA
3' ss Score
10.11
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTCATTGACCACAGTGGCGTCCGGCTCGGAGAGTATGAGGATGTGTCCAAAGTGGAGAAATACGAGATCTCACCAGAAGCTTACGAACGGAGGCAGA
Seq A exon
ACACAGTTCGATCCTTCATGAAACGCAGCAAGCTAGGCCCGTACAATGAAGAACTCCGGGCCCAGCAAGAGGCAGAGGCTGCCCAGCGTCTCAGTGAGGAGAAGGCCCAAGCCAGTGCCATCTCTGTGGGGAGCCGTTGTGAGGTGCGGGCACCCGACCACTCCCTTCGCAGGGGCACTGTCAT
Seq C2 exon
GACTCACAGATTTCAAGCCAGGCTACTGGGTTGGTGTCCGATATGATGAGCCGTTAGGAAAAAACGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006095-'5-7,'5-5,7-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.215 C2=0.000
Domain overlap (PFAM):
C1:
PF145601=Ubiquitin_2=PD(8.2=21.2)
A:
PF0130220=CAP_GLY=PU(31.4=33.8)
C2:
PF0130220=CAP_GLY=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGACCACAGTGGCGTC
R:
TCCTAACGGCTCATCATATCGGA
Band lengths:
156-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types