HsaEX6094692 @ hg38
Exon Skipping
Gene
ENSG00000105254 | TBCB
Description
tubulin folding cofactor B [Source:HGNC Symbol;Acc:HGNC:1989]
Coordinates
chr19:36116041-36125523:+
Coord C1 exon
chr19:36116041-36116184
Coord A exon
chr19:36121527-36121718
Coord C2 exon
chr19:36125451-36125523
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCAGCCCCCTCTGCCCACAGACA
3' ss Score
10.27
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
TGTAAACTGGAGTTGCTGGTGGGCAGCCCTGCTTCCTGCATGGAACTGGAGCTGTATGGAGTTGACGACAAGTTCTACAGCAAGCTGGATCAAGAGGATGCGCTCCTGGGCTCCTACCCTGTAGATGACGGCTGCCGCATCCAC
Seq A exon
ACACGGTCCGCTCTTTCCTGAAGCGCAGCAAGCTCGGCCGGTACAACGAGGAGGAGCGGGCTCAGCAGGAGGCCGAGGCCGCCCAGCGCCTGGCCGAGGAGAAGGCCCAGGCCAGCTCCATCCCCGTGGGCAGCCGCTGTGAGGTGCGGGCGGCGGGACAATCCCCTCGCCGGGGCACCGTCATGTATGTAG
Seq C2 exon
GTCTCACAGATTTCAAGCCTGGCTACTGGATTGGTGTCCGCTATGATGAGCCACTGGGGAAAAATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105254_MULTIEX1-3/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.313 C2=0.000
Domain overlap (PFAM):
C1:
PF145601=Ubiquitin_2=PU(79.1=97.1)
A:
NO
C2:
PF145601=Ubiquitin_2=PD(14.3=24.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACTGGAGTTGCTGGTGGG
R:
CCATCATTTTTCCCCAGTGGCT
Band lengths:
212-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains