DreEX0077548 @ danRer10
Exon Skipping
Gene
ENSDARG00000068404 | tbcb
Description
tubulin folding cofactor B [Source:ZFIN;Acc:ZDB-GENE-030131-9296]
Coordinates
chr18:37284129-37288753:+
Coord C1 exon
chr18:37284129-37284225
Coord A exon
chr18:37286352-37286543
Coord C2 exon
chr18:37288681-37288753
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAAGTTTTCTCATTTGTCAGATT
3' ss Score
5.59
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACAGACCGTAGCGGTACACAGAGCGGAGAGTTCACAGATTTGTCAAAAGTGGAGAAATTTGAAATCTCAGATGAAGCCTATGAAAAACGGGCAG
Seq A exon
ATTCAATTCGGAACTTCAAGAAGAATATGAAGTTAGGTCGATTTAATGAGGAAGAGAGGGCCAAGCAAGAAGAGGCTGTCGCTAAGAAAGAGGAAGAGGAGAAGGTGGCCGCTGAGGCTATCGCTGTTGGAAACCGCTGTAAAGTTCAAGTTCCTGGGCAGGCCACTAAGATTGGCACTGTTATGTATGTTG
Seq C2 exon
GTACGGCAGATTTCAAGCCAGGCTACTGGGTAGGTGTGAAGTACGATGAGCCACTCGGGAAGCATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068404-'7-6,'7-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.215 C2=0.000
Domain overlap (PFAM):
C1:
PF145601=Ubiquitin_2=PD(8.2=21.2)
A:
PF0130220=CAP_GLY=PU(31.4=33.8)
C2:
PF0130220=CAP_GLY=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTAGCGGTACACAGAGC
R:
CTGCCATCATGCTTCCCGAG
Band lengths:
162-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]