BtaEX6081948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47286941-47292062:+
Coord C1 exon
chr18:47286941-47287067
Coord A exon
chr18:47288223-47288315
Coord C2 exon
chr18:47290663-47292062
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGAT
3' ss Score
13.59
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAATCAGTGATGTTCAGTGATGTGTCCATCGACTTCTCTCTGGAAGAGTGGGAATTCCTGAATTTGGAACAGAGGGATTTGTATAGAGATGTAATGTTGGAGAACTACAGCAATTTGGTCTCATTGG
Seq A exon
GATGTTTCATTTCTAAACCAGATGTGATTTCCTTATTAGAACAAGGAAAAGAGCCCTGGAAAGTAGTGAGGAAAGGAAGAAGACAATATCCAG
Seq C2 exon
TTACTTCTTTTCGAAAAAGAAAAACCATGTGTTTGCTCTCTTGTTTTCTTTCAGATTTAGAGACCAACTATGAGATCAAGAAGTTATCTTCAGAAAATGACATTTATGAAATAAACTTATCCCAGTGGAAAATTATGGAAAGAATTAAAAACCATGGCCTTAAGAGCTTCATTTTAAAAAATGATTGGGAGTCCAAAAGAAGATTTGAAGGACAAGAGGAATATTTCAACCAAGTGAAAATCACATCTCAAAAAATGTCCCCTTACCAAAAACGCTCATCTCTTTCCTCACGTCAGAGAATTCATTATGTTGAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCCTTTAGAGTCCGCCAACAACTTACATTTCATCACCGAATTCATACTGGTGAGAAACCTTATGAATGTAAGGAATGTGGGATGGCATTTAGACAGACGGCACATCTTACTCGACATCAGAGACTTCATTCTGGTGAAAAACTCTATGAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464-'2-4,'2-3,4-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF127602=Zn_Tnp_IS1595=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=PU(19.2=1.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGTTCAGTGATGTGTCCA
R:
AACAAGAGAGCAAACACATGGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]