MmuEX0053637 @ mm10
Exon Skipping
Gene
ENSMUSG00000098022 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30056037-30066367:-
Coord C1 exon
chr7:30066241-30066367
Coord A exon
chr7:30062229-30062318
Coord C2 exon
chr7:30056037-30057519
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTCCTTCTAAGCAGGAT
3' ss Score
8.59
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTCAGTGGTGTTCAGTGATGTGTCCATAGCCTTCTCGCAGGAGGAGTGGGAGTCCCTGGACTTAGAACAGAGGAATTTGTACAAGGATGTGATGATGGAGAACTACCACAATGTGGCCTCGCTAG
Seq A exon
GATGCTTCATTTCTAAGCCAGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGAAGGTTGTGAGGCAAAGAAAACCATGTCCAG
Seq C2 exon
ATTCGGAAACTAAGGATGAGACCAACCAGGTGTTCTCAGAAAATGGTATTTATGAAATGAATTTATCCCAGTGGAAGATAATGGAAAGAATTGGGAACAGTGGCCTAAAGAGCCTCCTTTTAAAAAATGGATGGGAGTCGAGAAGAAAACAGGAAAGACAAGAGGACCCTCAGGAGGGGTATCTCAGTCAAGTGAGGCACACATCTGAAAGAGTGTCCTCTTATGAGAAGCGCGCATTAACTACACGTCAGAGGATCCACTTTGTGGAGAAACCCTATGAGTGCAATGAATGTGGGAAGGCCTTTAGAGTCCGCCAGCAGCTCACTTTTCATCACAGAATTCACACAGGCGAGAAGCCCTATGAATGTAAGGAGTGTGGGATGGCCTTCAGGCAGACGGCCCACCTTACCAGGCACCAGAGACTGCATTCTGGTGAAAAACTGTATGAATGCAAGGAGTGTGGGCAAGCTTTCATATACGGCCCCGAGCTCAGAGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098022_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.161 C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF127602=Zn_Tnp_IS1595=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGGACTTAGAACAGAGGA
R:
AGGCCACTGTTCCCAATTCTT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types