HsaEX0072675 @ hg38
Exon Skipping
Gene
ENSG00000181007 | ZFP82
Description
ZFP82 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:28682]
Coordinates
chr19:36391960-36408013:-
Coord C1 exon
chr19:36407887-36408013
Coord A exon
chr19:36405580-36405672
Coord C2 exon
chr19:36391960-36394110
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTTCTTCTAAGCAGGAT
3' ss Score
8.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
Seq A exon
GATGCTTCATTTCTAAACCAGATGTGATTTCCTCATTGGAGCAAGGAAAAGAGCCTTGGAAAGTTGTGAGGAAAGGAAGAAGACAATATCCAG
Seq C2 exon
ATTTGGAGACCAAGTATGAGACCAAGAAGTTATCTTTAGAAAATGACATTTATGAAATAAATTTATCCCAGTGGAAGATAATGGAAAGAATTGAAAACCATGGCCTTAAGGGTCTCATTTTAAAAAATGATTGGGAATCCACAGGAAAAATTGAAGGACAGGAGAGACCTCAAGAAGGATACTTCAGTAGTGTGAAAATGCCATCTGAAAAGGTGTCCTCTTACCAGAAACGCACATCTGTTACTCCACATCAGAGACTTCATTTTGTTGATAAACCCTATGAATGTAAGGAATGTGGGAAGGCGTTCAGAGTGCGCCAACAGCTTACTTTTCATCACAGAATTCATACTGGTGAAAAACCGTATGAATGTAAGGAATGTGGGATGGCCTTCAGACAGACTGCACACCTTACTCGACATCAGAGACTTCATTCTGGTGAAAAACTCTATGAATGTAAGGAATGTGGGGAAGCTTTCATATGTGGTGCAGATCTTAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181007_MULTIEX1-1/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF127602=Zn_Tnp_IS1595=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACTTGGTCTCACTGG
R:
CCTGTCCTTCAATTTTTCCTGTGG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development