HsaEX0072675 @ hg19
Exon Skipping
Gene
ENSG00000249760 | ZFP82
Description
NA
Coordinates
chr19:36882862-36898915:-
Coord C1 exon
chr19:36898789-36898915
Coord A exon
chr19:36896482-36896574
Coord C2 exon
chr19:36882862-36885012
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTTCTTCTAAGCAGGAT
3' ss Score
8.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
Seq A exon
GATGCTTCATTTCTAAACCAGATGTGATTTCCTCATTGGAGCAAGGAAAAGAGCCTTGGAAAGTTGTGAGGAAAGGAAGAAGACAATATCCAG
Seq C2 exon
ATTTGGAGACCAAGTATGAGACCAAGAAGTTATCTTTAGAAAATGACATTTATGAAATAAATTTATCCCAGTGGAAGATAATGGAAAGAATTGAAAACCATGGCCTTAAGGGTCTCATTTTAAAAAATGATTGGGAATCCACAGGAAAAATTGAAGGACAGGAGAGACCTCAAGAAGGATACTTCAGTAGTGTGAAAATGCCATCTGAAAAGGTGTCCTCTTACCAGAAACGCACATCTGTTACTCCACATCAGAGACTTCATTTTGTTGATAAACCCTATGAATGTAAGGAATGTGGGAAGGCGTTCAGAGTGCGCCAACAGCTTACTTTTCATCACAGAATTCATACTGGTGAAAAACCGTATGAATGTAAGGAATGTGGGATGGCCTTCAGACAGACTGCACACCTTACTCGACATCAGAGACTTCATTCTGGTGAAAAACTCTATGAATGTAAGGAATGTGGGGAAGCTTTCATATGTGGTGCAGATCTTAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249760-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACTTGGTCTCACTGG
R:
CCTGTCCTTCAATTTTTCCTGTGG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)