BtaEX6081960 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000039075 | ZNF527

Description

Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]

Coordinates

chr18:47587428-47594485:+

Coord C1 exon

chr18:47587428-47587544

Coord A exon

chr18:47588196-47588291

Coord C2 exon

chr18:47592154-47594485

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTTTCTTCCCCAATAACAGGAC

3' ss Score

8.72

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GGATTGGTGACCTTCAGGGATGTAGCTCTGAATTTTTCCCAAGAGGAATGGGAATGGCTGGACTCATCTCAGAAGGATTTGTACAGAGATGTCATGTTGGAGAACTACAGGAACTTG

Seq A exon

GACTCTCCATTTCTAAGCCCAACATGATCTCCTTATTGGAACAAGGGAAGGAACCTTGGATGGTGGAGAGAGAGATGTCGGATGGTCAACATGCAG

Seq C2 exon

ACTGGGAGTCTTGGTATGAGATCAAGGCATTATCTCCAAAGTGGTACACTGATGAAGAGGAAATATCACAGGGGGTGATAACAAAAAGACTTACAAGTTATAGCCTTGAATTCTCCAGTTTCAGAGAAGCCTGGAAATATGAGGCTGAATTTGAGCGGCATCAAGGAAATCAGGAGAGGCATTTCAGGCAAGTGGCAACTCTTAAGGAAATCTCTGCTGTGAAGAAAGACAGTGAATATAATAATTCTGAGAGAAACATTCTCTTGAAGTCAGTACTTTTAACACAACAGAGAGTTCCCCCTGTAGAGCAAGTACATAAATTTGGTATTTTTAACAAAATGTTCCCCCCAAATTCAGTTCTAATTGAACATAAAAGACTGCATGCCGAGAAGGAATCTTTGATAGGTAATGAATGTGAAGAATTCAACCAGAGCACATACCTTAGTAAAGATGTAGAAATTTCTCCTGGGGAGAAATCTTATGAAAGTAATGATTTTTCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000039075-'4-7,'4-3,6-7=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.121 C2=0.038

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF097235=Zn-ribbon_8=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)

Main Inclusion Isoform:

ENSBTAP00000049121