BtaEX6082274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020428 | PAF1
Description
Bos taurus Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (PAF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046293]
Coordinates
chr18:49348919-49349376:-
Coord C1 exon
chr18:49349271-49349376
Coord A exon
chr18:49349107-49349175
Coord C2 exon
chr18:49348919-49349022
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTGCCTCTGCCAGATC
3' ss Score
9.23
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATTGGGGTTTCTGTGAAGCAGCAATTCACTGAGGAGGAAATATACAAAGACAGGGATAGCCAGATCACAGCTATTGAGAAGACTTTTGAGGATGCCCAGAAATCT
Seq A exon
ATCTCCCAGCATTATAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTTCCAGATTTTAAG
Seq C2 exon
ATGTGGATCAACCCTTGCGCTCAGGTAATCTTTGACTCAGACCCCGCCCCCAAGGACACAAGTGGTGCAGCTGCATTGGAGATGATGTCTCAGGCCATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020428-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.217 C2=0.114
Domain overlap (PFAM):
C1:
PF039858=Paf1=FE(10.6=100)
A:
PF039858=Paf1=FE(6.7=100)
C2:
PF039858=Paf1=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTTTCTGTGAAGCAGCAA
R:
CACCACTTGTGTCCTTGGGG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]