MmuEX6009402 @ mm10
Exon Skipping
Gene
ENSMUSG00000003437 | Paf1
Description
Paf1, RNA polymerase II complex component [Source:MGI Symbol;Acc:MGI:1923988]
Coordinates
chr7:28395952-28396387:+
Coord C1 exon
chr7:28395952-28396057
Coord A exon
chr7:28396134-28396202
Coord C2 exon
chr7:28396284-28396387
Length
69 bp
Sequences
Splice sites
3' ss Seq
CACCCTTTTTGTTCTATCAGATC
3' ss Score
10.04
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATTGGGGTTTCTGTGAAACAGCAGTTCACAGAGGAAGAAATATACAAAGACAGGGACAGCCAAATCACAGCCATTGAAAAGACTTTTGAAGATGCCCAGAAATCG
Seq A exon
ATCTCCCAGCATTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTCCCAGATTTTAAG
Seq C2 exon
ATGTGGATAAACCCATGTGCTCAGGTCATTTTTGACTCAGACCCAGCCCCCAAGGACACAAGTGGTGCAGCTGCATTAGAGATGATGTCTCAGGCCATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003437-'11-16,'11-14,13-16
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.217 C2=0.114
Domain overlap (PFAM):
C1:
PF039858=Paf1=FE(8.3=100)
A:
PF039858=Paf1=FE(5.2=100)
C2:
PF039858=Paf1=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGACAGGGACAGCCAA
R:
CTGATCATGGCCTGAGACATCA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types