RnoEX0063021 @ rn6
Exon Skipping
Gene
ENSRNOG00000019746 | Paf1
Description
PAF1 homolog, Paf1/RNA polymerase II complex component [Source:RGD Symbol;Acc:1306219]
Coordinates
chr1:85365171-85365604:-
Coord C1 exon
chr1:85365499-85365604
Coord A exon
chr1:85365356-85365424
Coord C2 exon
chr1:85365171-85365274
Length
69 bp
Sequences
Splice sites
3' ss Seq
CACCCTTTTTCTTCTATCAGATC
3' ss Score
10.43
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATTGGGGTTTCTGTGAAACAGCAGTTCACAGAGGAAGAAATATACAAAGACAGGGACAGCCAGATCACAGCCATTGAGAAGACTTTTGAAGATGCCCAGAAATCG
Seq A exon
ATCTCCCAGCATTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTCCCAGACTTTAAG
Seq C2 exon
ATGTGGATCAACCCATGTGCTCAGGTCATTTTTGATTCAGACCCAGCCCCCAAGGACACAAGTGGAGCAGCTGCATTAGAGATGATGTCTCAGGCCATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019746-'7-12,'7-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.217 C2=0.114
Domain overlap (PFAM):
C1:
PF039858=Paf1=FE(11.5=100)
A:
PF039858=Paf1=FE(5.2=100)
C2:
PF039858=Paf1=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAACAGCAGTTCACAGAGGA
R:
TAATGCAGCTGCTCCACTTGT
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]