MmuEX6009402 @ mm9
Exon Skipping
Gene
ENSMUSG00000003437 | Paf1
Description
Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1923988]
Coordinates
chr7:29180971-29181406:+
Coord C1 exon
chr7:29180971-29181076
Coord A exon
chr7:29181153-29181221
Coord C2 exon
chr7:29181303-29181406
Length
69 bp
Sequences
Splice sites
3' ss Seq
CACCCTTTTTGTTCTATCAGATC
3' ss Score
10.04
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATTGGGGTTTCTGTGAAACAGCAGTTCACAGAGGAAGAAATATACAAAGACAGGGACAGCCAAATCACAGCCATTGAAAAGACTTTTGAAGATGCCCAGAAATCG
Seq A exon
ATCTCCCAGCATTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTCCCAGATTTTAAG
Seq C2 exon
ATGTGGATAAACCCATGTGCTCAGGTCATTTTTGACTCAGACCCAGCCCCCAAGGACACAAGTGGTGCAGCTGCATTAGAGATGATGTCTCAGGCCATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003437-'9-13,'9-12,11-13=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.217 C2=0.114
Domain overlap (PFAM):
C1:
PF039858=Paf1=FE(8.3=100)
A:
PF039858=Paf1=FE(5.2=100)
C2:
PF039858=Paf1=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGACAGGGACAGCCAA
R:
CTGATCATGGCCTGAGACATCA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: