HsaEX0045222 @ hg38
Exon Skipping
Gene
ENSG00000006712 | PAF1
Description
PAF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:25459]
Coordinates
chr19:39388762-39389198:-
Coord C1 exon
chr19:39389093-39389198
Coord A exon
chr19:39388947-39389015
Coord C2 exon
chr19:39388762-39388865
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTTTGTTCCACCAGATC
3' ss Score
10.3
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GATTGGGGTTTCTGTGAAGCAGCAGTTTACCGAGGAAGAAATATACAAAGACAGGGATAGCCAGATCACAGCCATTGAGAAGACTTTTGAGGATGCCCAGAAATCA
Seq A exon
ATCTCACAGCATTACAGCAAACCCCGAGTCACACCGGTGGAGGTCATGCCTGTCTTCCCAGACTTTAAG
Seq C2 exon
ATGTGGATCAATCCATGTGCTCAGGTGATCTTTGACTCAGACCCAGCCCCCAAGGACACGAGTGGTGCAGCTGCGTTGGAGATGATGTCTCAGGCCATGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006712-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.228 C2=0.114
Domain overlap (PFAM):
C1:
PF039858=Paf1=FE(14.1=100)
A:
PF039858=Paf1=FE(5.2=100)
C2:
PF039858=Paf1=FE(13.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGCAGTTTACCGAGG
R:
ACATCATCTCCAACGCAGCTG
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development