BtaEX6084146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030885 | SSC5D
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr18:62469036-62470315:-
Coord C1 exon
chr18:62470007-62470315
Coord A exon
chr18:62469332-62469451
Coord C2 exon
chr18:62469036-62469149
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACACGCTGCTGTCCCCAAGGCC
3' ss Score
4.12
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGCGGCTGCGTCTGGCCGACGGGCCCCATGGGTGCGCGGGCCGCCTGGAGGTGTGGCACGGCGGGCGCTGGGGCACCGTGTGCGATGACGGCTGGGACCTGCGGGACGCCGCCGTGGCCTGCCGGGAGCTGGGCTGCGGGGGCGCGCTGGCCGCCCCTGGGGGCGCCTTCTTTGGGGAGGGCGCAGGGCCCGTGTGGCTGAGCGAACTGGCCTGCCGGGGCGGGGAGCGGCAGCTGGGCCTCTGCCCCCACCGGGGCTGGAAGGCCCACATCTGCTCACACGAGGAGGATGCGGGGGTCGTCTGTGCAG
Seq A exon
GCCAGCGTGGGACAGACTCCAGGGACCATGACGATCCACCTTCAGTCCTGGATGGGGACCCCTGGCCAGGGCTGGCAGGGGAGCTGAGCCCCGGCTCTGAGGAGGCCCCGGTGACGCCTG
Seq C2 exon
CACCCCGCCCAGCCGGGACCCCCCAGAGTGGCTCCCGGAAGAAGAGCCCCCGGCTGCCCAAGCCGGCCAAGTCCACCAGGGCCCCAGTGCTGACTGCCGGAGCCCCCCGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030885-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGCGCCTTCTTTG
R:
GTCAGCACTGGGGCCCTG
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]