MmuEX6008300 @ mm10
Exon Skipping
Gene
ENSMUSG00000035279 | Ssc5d
Description
scavenger receptor cysteine rich family, 5 domains [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4926974-4928009:+
Coord C1 exon
chr7:4926974-4927282
Coord A exon
chr7:4927552-4927665
Coord C2 exon
chr7:4927896-4928009
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTTTGGTCCTCTCCCATAGGTC
3' ss Score
11.79
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
AGCGACTCCGCCTGGCTGATGGTCCTCATGGCTGCGCAGGACGCCTGGAGGTCTGGCACAGCGGGCGCTGGGGCACCGTGTGTGATGACGGATGGGACCTTCGGGATGCTGAAGTGGCCTGCCGTGTGTTAGGCTGCGGAGGGGCGCTGGCAGCCCCTGGGGGTGCCTTCTTCGGGGAGGGCACTGGGCCTGTATGGCTCAGTGAACTGAACTGTCGGGGCAATGAGGGTCAGCTGGGTATCTGTCCCCACCGGGGCTGGAAGGCCCATATCTGCTCTCATGAGGAGGACGCAGGCGTCGTCTGTGTAG
Seq A exon
GTCAGCGTGCAGCTAACTCTAGAGAAGATTCAATGTCCCTGCTGGATGGGGATCCATGGCTGGCACTGTCTGGGGAGCTAAGCCCCAGCTCAGAGGAGCCCCCTATAACTCACG
Seq C2 exon
CTCCCCAACCAGCAGCAAGCTCCCAGAATGGCCCCCGGAAGAAGAACCCCCGGCCACCCAAGCAGACCAAGTCCACCCGAGCCCCTGTACTGACAAATGGAGCTCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.615 C2=1.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCGGGATGCTGAAGTG
R:
CCATTCTGGGAGCTTGCTGC
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types