RnoEX6001265 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72459381-72460403:-
Coord C1 exon
chr1:72460095-72460403
Coord A exon
chr1:72459722-72459835
Coord C2 exon
chr1:72459381-72459494
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTTTGCTTCTCTCCCATAGGTC
3' ss Score
12.57
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGCGACTCCGCCTGGCTGATGGCCCTCATGGCTGTGCAGGACGCCTGGAGGTCTGGTACAGCGGGCGCTGGGGCACCGTGTGTGATGACGGATGGGACCTTCGGGATGCTGCAGTGGCCTGCCGTGTGTTGGGCTGCGGAGGGGCGCTAGCCGCCCCCGGGGGTGCCTTCTTTGGGGAGGGCACTGGGCCCGTGTGGCTCAGTGAGCTGGCCTGTCGGGGCAGTGAGGGACAGCTGGGTATCTGTCCCCACCGGGGCTGGAAGGCTCATATCTGCTCTCACGAGGAGGACGCGGGCGTCGTCTGTGTAG
Seq A exon
GTCAGCGTGCAGCTAACTCTAGAGAAGACTCAGTGTCCCTGCTGGATGGGGACCCATGGCTGGCACTGTCTGGGGAGCTGAGCCCCAGCTCAGAGGAGCCCCCTATAACTCATG
Seq C2 exon
CTCCCCAGCCGGCAGCAAGCTCCCAGAATGGCCCCCGAAAGAAGAACCCCCGGCCACCCAAGCAGGTCAAGTCCACCCGAGCCCCTGTACTGACAAATGGAGCTCCCCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687-'7-3,'7-2,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.487 C2=1.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGACGGATGGGACCTTC
R:
CATTCTGGGAGCTTGCTGCC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]