BtaEX6084491 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000003456 | ZNF606

Description

zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]

Coordinates

chr18:65645367-65653994:-

Coord C1 exon

chr18:65653868-65653994

Coord A exon

chr18:65653541-65653639

Coord C2 exon

chr18:65645367-65647339

Length

99 bp

Sequences

Splice sites

3' ss Seq

TGTTTTTCCTCTTCATGTAGGGA

3' ss Score

9.32

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GAACCAGTGACCTTCAATGATGTGGCTGTGGACTTCACACAAGAGGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGACGTGATGCTGGAGACCTATGGGCACCTGCTCTCTGTAG

Seq A exon

GGAATCAGATCACCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCATGGTCAATGGAACCAGCATATCCTCTTCAAGGCACTTGTCCAG

Seq C2 exon

AATGGATGAAAAATCTTGAAAGCAAAGCATTGATCCCAACACAGAGCATACTTGAGGAGGAACAGTCCCATAGCATGAAGTTGGAGAGATACATATGGGATGATCCTTGGTTCTCCAGGTTAGAAGTTTTGGGATGTAAAGACCAATTAGAAATGTATCACGTGAACCAGAGTACAGCTATGAGGCAGATGGTCTTCATGCAAAAGCAGATACTATCTCAAAGAGGCTCTGAGTTCTGTGAACTTGGAGCAGGGTGTAGCCAGAGCTTAAACATTGTTCCATCTCAGAAAGTTTCTCAAGTAGAACATTTCTATAAGCCTGATGTAAATGCTGAAAGTTGGAGATGTAACTCAGCCATAATGTATACTGATAAGATTACCTGTGAAAATAATGAGTATGACAAAGCCTTCTACCAGTCCATGCAGCCTGTTCACCCTGCAAGGGTACAAACTGGAGATAATCTTTTAAAATGTACTGATACTGTTAAATCTTTCAATCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000003456-'8-10,'8-8,9-10=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.070 A=0.176 C2=0.002

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.8)

Main Inclusion Isoform:

ENSBTAP00000004486