HsaEX6096978 @ hg38
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr19:57977053-57988721:-
Coord C1 exon
chr19:57988595-57988721
Coord A exon
chr19:57988207-57988302
Coord C2 exon
chr19:57977053-57980279
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCCTCCATGCATAGGAA
3' ss Score
8.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAACCAGTGACCTTCAAGGACGTGGCCGTGGACTTCACCCAAGAAGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGATGTGATGCTGGAGACCTATGGTCACCTGCTCTCTGTGG
Seq A exon
GAAATCAGATTGCCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCGTGGTCAGTGGAGCAGGCATGTCCTCAACGCACTTGTCCAG
Seq C2 exon
AATGGGTGAGAAATCTTGAAAGCAAAGCATTGATCCCAGCACAGAGCATTTTTGAGGAAGAACAATCCCATGGCATGAAGTTGGAAAGATATATATGGGATGATCCTTGGTTCTCCAGGTTAGAAGTTTTGGGATGTAAAGACCAATTAGAAATGTACCACATGAACCAGAGTACAGCTATGAGGCAGATGGTCTTCATGCAAAAGCAAGTACTATCCCAGAGAAGCTCTGAATTCTGTGGACTTGGGGCAGAGTTTAGCCAGAACTTAAACTTTGTTCCATCTCAGAGAGTTTCTCAGATAGAACATTTCTATAAGCCTGATACACATGCTCAAAGTTGGAGATGTGACTCAGCCATAATGTATGCAGATAAGGTTACCTGTGAAAATAATGATTATGACAAAACTGTTTATCAGTCCATTCAACCTATTTACCCTGCAAGAATACAAACTGGAGATAATCTTTTCAAATGTACTGATGCTGTTAAATCTTTCAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704-'16-13,'16-9,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.030 C2=0.020
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF139121=zf-C2H2_6=WD(100=4.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTCAAGGACGTGG
R:
TGCTCTGTGCTGGGATCAATG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains