RnoEX6001177 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66231763-66237489:-
Coord C1 exon
chr1:66237363-66237489
Coord A exon
chr1:66237010-66237102
Coord C2 exon
chr1:66231763-66233744
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCCTCCGTGTGTAGGGA
3' ss Score
10.49
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGAGCAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTAGAGACTTATGGACACCTACTTTCTGTGG
Seq A exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGAAGAGCCATGGTCACTGGAGCAAGGATATCCTAAGAGCAGCTGTCCAG
Seq C2 exon
AGTGGATGAGAAATGTTGAAAGCAAAGCATTGATTCCAGCACAGAGTGTTTTTGAGGAAGAACAATCCAGCAATGGAATGGTGTTAGAAAGATACATATGGGATAATCCATGGCTCTCCAGGTTAGGAGTTTTGGGATATGGAGACCAAATAGAAATGTATCACATGAATCAGAACGCAGGTATGAGGGAAATGGTCTTCATGCAAAAACAAGTACTTTCTCAACGAGGTTCTGAATTCTGTAAACTTGGCACAGAGTACAGCCAAAGCTTAAACTTAATTCCACCTCAAAGAGTTTCTCAATTAGAACATTTCTACAAATCTGATACACATCTTGAAACTTGGAGATGTAATTCAGCCATAATGTATGCAGACAAAGTTACCTGTGAAAATATTGATTATGAAAAAGCCTTCTGCCAGTCTGTTCAGCCTGTTTACCCTGCAAAATTGCAAACTAGAGATAATATGTTCAAATGTACTGATGCTGTGAAGTCTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127-'10-11,'10-9,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF139121=zf-C2H2_6=WD(100=4.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTCTGTACCGTGATGTG
R:
CCTAACCTGGAGAGCCATGGA
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]