BtaEX6084923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13167009-13167969:-
Coord C1 exon
chr19:13167856-13167969
Coord A exon
chr19:13167473-13167649
Coord C2 exon
chr19:13167009-13167161
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGACTGCCCGCCCCACACAGGAG
3' ss Score
6.92
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGGAGTATGCAATGGAGGGCCTGGCGTGGTCGTTTGTCAGCTACCAGGACAACCAGCCCTGCTTGGATCTCATCGAGGGGAGCCCCGTCAGCATCTGCTCCCTCATAAACGAG
Seq A exon
GAGTGCCGCCTTAATCGGCCAAGCAGCGCAGCCCAGCTCCAGACGCGCATCGAGAGCGCCCTGACCGGCCACCCCCGCCTGGGGCGCGACAGGCTGAGCCCGGAGCCCAGCTTCATTGTGCTGCATTACGCGGGGCCCGTGCGGTACCGCACCGCGGGCCTGGTGGAGAAGAACAAG
Seq C2 exon
GACCCCGTCCCCCCGGAGCTGACCAGCCTCCTGCAGCAGTCCCAGGACCCCCTGCTCAAGGTGCTCTTTCCTGCCGACCCCGAAGACAAGTCCCCTGAGGAGCCCTCCGGCCAGAACCGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'23-31,'23-30,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.583
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(9.9=100)
C2:
PF0006316=Myosin_head=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTCGTTTGTCAGCTACC
R:
CTTGAACTTGGACACCACGGT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]