DreEX6009019 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3637394-3639911:-
Coord C1 exon
chr5:3639676-3639911
Coord A exon
chr5:3638067-3638243
Coord C2 exon
chr5:3637394-3637534
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTCTCTGACTTCCAGGAG
3' ss Score
9.54
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTCTGCTGGATGTGTATGGTTTCGAATGCTTCCTCCTGAATAACCTGGAGCAGCTGTGTATTAATTACGCTAACGAGAAGCTACAGCAGCACTTCGTGGCTCATTATCTGAAGGCCCAGCAGGAGGAGTATGTGAGTGAGGGGCTGCAGTGGTCTTTCATTCGTTACCAAGACAACCAGGGCTGCCTGGACCTGATTGAAGGCAGTCCCTCCAGCATCATCTCTCTGCTCAATGAG
Seq A exon
GAGTGTCGACTGAACAGAGCATCGGATGCAAAGAAGTTTCGTGTGCGTCTGGAGAAGGAGCTGTCAGATAATGCCAACATCAGCTGGGACAAGTTCAGCAAAGAGCCCCATTTCACTGTGGCCCACTACGCTGGCAGAGTCAGCTACCAGATTGAGGGCATGATGGAGAAGAACAAG
Seq C2 exon
GACCCAGTTCCCCCTGAGCTCATCTGTCTTCTACAAAAGTCCCAAGATTCATTGCTGAACAGCCTCTTTGCGGATGGTGACCGTGAGAGCGAGGGGTCTCGGGGACACAGTAAAGTGGTCACTGTTGTGTCCAAATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.043
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(16.1=100)
A:
PF0006316=Myosin_head=FE(12.0=100)
C2:
PF0006316=Myosin_head=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCTGAAGGCCCAGCAGGA
R:
ACCACTTTACTGTGTCCCCGA
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]