GgaEX1038023 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8132921-8133829:-
Coord C1 exon
chr19:8133716-8133829
Coord A exon
chr19:8133357-8133533
Coord C2 exon
chr19:8132921-8133067
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTGTTACGCAGGAA
3' ss Score
8.19
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAAGAATATGCATCTGAAGGTTTACAGTGGTCTTTCATAAACTACCAGGACAACCAGAGCTGCCTTGACCTGATAGAGGGCAATCCTCTCAGCATTTTTTCTCTGCTGAATGAG
Seq A exon
GAATGCCGTTTGAATAGATCCTCCAACCCTGACCTGTTTCAAACTCGGATTGAAAAAGCTTTGTCTGATAATCAATGTTTGAGTCGAGACAAGTTTAGTAAGAAGCCTAACTTCATTATTTCACATTATGCTGGCAAAGTCTGCTATCAGCTGGCAGCAATGGTGGAGAAAAATAAG
Seq C2 exon
GACCCCATTCCACCAGAACTTGTGCATGTTCTGCAAAATTCTAAGGACACTTTGCTTCAAAAATTATTTCCTATTGCAGAAACCAACCAAAATAATACCAAAACGCAGAACAGAGCGGCTGTTGTTACAGTGGTGTCAAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCTGAAGGTTTACAGTGGT
R:
ACACCACTGTAACAACAGCCG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]