GgaEX1038023 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8086547-8087455:-
Coord C1 exon
chr19:8087342-8087455
Coord A exon
chr19:8086983-8087159
Coord C2 exon
chr19:8086547-8086693
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTGTTACGCAGGAA
3' ss Score
8.19
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAAGAATATGCATCTGAAGGTTTACAGTGGTCTTTCATAAACTACCAGGACAACCAGAGCTGCCTTGACCTGATAGAGGGCAATCCTCTCAGCATTTTTTCTCTGCTGAATGAG
Seq A exon
GAATGCCGTTTGAATAGATCCTCCAACCCTGACCTGTTTCAAACTCGGATTGAAAAAGCTTTGTCTGATAATCAATGTTTGAGTCGAGACAAGTTTAGTAAGAAGCCTAACTTCATTATTTCACATTATGCTGGCAAAGTCTGCTATCAGCTGGCAGCAATGGTGGAGAAAAATAAG
Seq C2 exon
GACCCCATTCCACCAGAACTTGTGCATGTTCTGCAAAATTCTAAGGACACTTTGCTTCAAAAATTATTTCCTATTGCAGAAACCAACCAAAATAATACCAAAACGCAGAACAGAGCGGCTGTTGTTACAGTGGTGTCAAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCTGAAGGTTTACAGTGGT
R:
ACACCACTGTAACAACAGCCG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]