MmuEX6088397 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84900474-84901503:+
Coord C1 exon
chr11:84900474-84900587
Coord A exon
chr11:84900842-84901018
Coord C2 exon
chr11:84901351-84901503
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGCCCACTCCCATCCCACAGGAA
3' ss Score
10.85
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAGGAGTACGAAGTTGAGGGCCTGGAGTGGTCATTTGTCAACTACCAGGACAACCAGACCTGCTTAGATCTCCTTGAAGGGAGCCCCATCAGCATCTGTTCCCTCATAAATGAG
Seq A exon
GAATGCCGCCTTAACCGGCCAAGCAGTGCAGCACAACTACAGACGCGCATCGAGAGCACGCTGGCAGGACGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTCGTGGTTGTGCATTTCGCGGGACCTGTACGGTACCACACAGCCGGCCTGGTGGAAAAGAACAAG
Seq C2 exon
GACCCTGTTCCCCCTGAGCTGACTGAGCTCCTGCAGCAATCCCAAGACCCCCTGCTCACGATGCTGTTTCCTGCCAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCCGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'24-31,'24-28,34-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.569
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(8.9=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAAGTTGAGGGCCTGGAG
R:
TGGACACCACAGTCAATGCAG
Band lengths:
253-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types